Stem-loop sequence gga-let-7f

AccessionMI0001233 (change log)
DescriptionGallus gallus let-7f stem-loop
Gene family MIPF0000002; let-7
Literature search

49 open access papers mention gga-let-7f
(245 sentences)

Stem-loop 
       a ug                      ---------       u 
5' ucag g  agguaguagauuguauaguugu         aggguag u
   |||| |  ||||||||||||||||||||||         ||||||| a
3' aguc c  uccguuaucuaacauaucaaua         ucccauu u
       - cu                      gaggacuug       u
Get sequence
Deep sequencing
14433578 reads, 1.72e+05 reads per million, 5 experiments
Confidence Annotation confidence: high
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Genome context
Coordinates (Gallus_gallus-5.0; GCA_000002315.3) Overlapping transcripts
chr12: 6092103-6092189 [-]
sense
ENSGALT00000028972 ; gga-let-7f-201; exon 1
Clustered miRNAs
< 10kb from gga-let-7f
gga-let-7a-1chr12: 6092517-6092606 [-]
gga-let-7fchr12: 6092103-6092189 [-]
gga-let-7dchr12: 6091058-6091160 [-]
Database links

Mature sequence gga-let-7f-5p

Accession MIMAT0001162
Sequence

7 -  

ugagguaguagauuguauaguu

 - 28

Get sequence
Deep sequencing14433119 reads, 5 experiments
Evidence experimental; Illumina [2]
Database links
Predicted targets

Mature sequence gga-let-7f-3p

Accession MIMAT0026528
Sequence

63 -  

cuauacaaucuauugccuuccc

 - 84

Get sequence
Deep sequencing457 reads, 5 experiments
Evidence experimental; Illumina [2]
Predicted targets

References

1
PMID:15592404 "Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution" International Chicken Genome Sequencing Consortium Nature. 432:695-716(2004).
2
" McBride D, Carre W, Law A, Clinton M Unpublished.
3
PMID:23034410 "Birth and expression evolution of mammalian microRNA genes" Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H Genome Res. 23:34-45(2013).