miRBase entry: gga-let-7f

Stem-loop gga-let-7f


Accession
MI0001233
Description
Gallus gallus gga-let-7f precursor miRNA
Gene family
MIPF0000002; let-7

Literature search
49 open access papers mention gga-let-7f
(253 sentences)

Sequence

2457350 reads, 33796 reads per million, 5 experiments
ucagagUGAGGUAGUAGAUUGUAUAGUUguaggguaguuauuuuacccuguucaggagauaaCUAUACAAUCUAUUGCCUUCCCuga
((((.(.((((((((((((((((((((((((((((((.....))))))).........))))))))))))))))))))))).)))))

Structure
    a U                       ---------       u 
ucag g GAGGUAGUAGAUUGUAUAGUUgu         aggguag u
|||| | |||||||||||||||||||||||         ||||||| a
aguC C UUCCGUUAUCUAACAUAUCaaua         ucccauu u
    - C                       gaggacuug       u 


Annotation confidence High
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Genome context
chr12: 6092103-6092189 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from gga-let-7f
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gga-let-7f-5p

Accession MIMAT0001162
Description Gallus gallus gga-let-7f-5p mature miRNA
Sequence 7 - UGAGGUAGUAGAUUGUAUAGUU - 28
Evidence experimental
Illumina [2]
Database links
Predicted targets

Mature gga-let-7f-3p

Accession MIMAT0026528
Description Gallus gallus gga-let-7f-3p mature miRNA
Sequence 63 - CUAUACAAUCUAUUGCCUUCCC - 84
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 15592404
    Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
    "International Chicken Genome Sequencing Consortium"
    "Nature (2004) 432:695-716


  2. "McBride D, Carre W, Law A, Clinton M"
    (None) None:

  3. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45