Stem-loop sequence gga-mir-124b

Accession

MI0001252 (change log)

Previous IDs

gga-mir-124b-1

Description

Gallus gallus miR-124b stem-loop

Gene family

MIPF0000021; mir-124

Literature search

13 open access papers mention gga-mir-124b
(38 sentences)

Stem-loop

   ----------a       cg   u           aga        uaau 
5'            gccccag  uuu guguucacugc   ccuugauu    g
              |||||||  ||| |||||||||||   ||||||||    u
3'            cgggguu  aaa cguaagugacg   ggaauuag    c
   gucggguccga       ug   c           cac        caca 

Deep sequencing

148401 reads, 1.32e+03 reads per million, 5 experiments

Confidence

Annotation confidence: not enough data

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Comments

This sequence is a predicted homologue of a verified miRNA from human, mouse or rat. Its expression has not been validated in chicken.

Genome context

Coordinates (Gallus_gallus-5.0; GCA_000002315.3)	Overlapping transcripts
chr23: 2223486-2223578 [+]	intergenic
AADN04001795.1: 21649-21741 [+]	intergenic
AADN04018142.1: 2683-2775 [+]	intergenic

Database links

• EntrezGene:
• miRBase Tracker:MI0001252

Mature sequence gga-miR-124b

• Accession: MIMAT0001174
• Sequence: 50 - uuaaggcacgcagugaaugcca - 71
• Deep sequencing: 148401 reads, 5 experiments
• Evidence: by similarity; MI0000444
• Predicted targets:
  • TargetScanVert:gga-miR-124b
  • miRDB:gga-miR-124b

References

1. PMID:15592404 "Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution" International Chicken Genome Sequencing Consortium Nature. 432:695-716(2004).