Stem-loop gga-mir-100

Accession

MI0001258

Description

Gallus gallus gga-mir-100 precursor miRNA

Gene family

MIPF0000033; mir-10

Literature search

12 open access papers mention gga-mir-100
(28 sentences)

Sequence

1040577 reads, 13390 reads per million, 5 experiments

ccuguugccacaAACCCGUAGAUCCGAACUUGUGgucauauuccacacAAGCUUGUAUCUAUAGGUAUGugucugucugg
........((((.(((.((((((.(((.((((((...........)))))).))).)))))).))).)))).........

Structure

-ccuguugc    A   C      C   A      guca 
         caca ACC GUAGAU CGA CUUGUG    u
         |||| ||| |||||| ||| ||||||    a
         guGU UGG UAUCUA GUU GAAcac    u
ggucugucu    A   A      U   C      accu 

Annotation confidence High

Genome context

chr24: 3335097-3335176 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from gga-mir-100

Mature gga-miR-100-5p

• Accession: MIMAT0001178
• Description: Gallus gallus gga-miR-100-5p mature miRNA
• Sequence: 13 - AACCCGUAGAUCCGAACUUGUG - 34
• Evidence: experimental ; Illumina [2]

Mature gga-miR-100-3p

• Accession: MIMAT0026539
• Description: Gallus gallus gga-miR-100-3p mature miRNA
• Sequence: 49 - AAGCUUGUAUCUAUAGGUAUG - 69
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 15592404
   Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
   "International Chicken Genome Sequencing Consortium"
   "Nature (2004) 432:695-716


2. 
   "McBride D, Carre W, Law A, Clinton M"
   (None) None:


3. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45