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miRBase |
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Stem-loop sequence gga-let-7k |
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Accession | MI0001263 (change log) | |||||
Description | Gallus gallus let-7k stem-loop | |||||
Gene family | MIPF0000002; let-7 | |||||
Literature search |
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45 open access papers mention gga-let-7k | |||||
Stem-loop |
-------- cu gu a - ------ uc 5' gg gag aguagauug auaguu gu ggag c || ||| ||||||||| |||||| || |||| u 3' cc uuc ucaucuaac uaucaa cg ccuc a agaggaau -u ug a u aguuuc cu |
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Deep sequencing |
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Confidence |
Annotation confidence: high
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Comments |
This sequence is a predicted homologue of a verified miRNA from human, mouse or rat. Its expression has not been validated in chicken. |
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Genome context |
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Clustered miRNAs |
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Database links |
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Mature sequence gga-let-7k-5p |
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Accession | MIMAT0001182 |
Sequence |
4 - ugagguaguagauugaauaguu - 25 |
Deep sequencing | 7105968 reads, 5 experiments |
Evidence | experimental; Illumina [2] |
Database links |
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Predicted targets |
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Mature sequence gga-let-7k-3p |
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Accession | MIMAT0026543 |
Sequence |
54 - cuauacaaucuacugucuuucc - 75 |
Deep sequencing | 865 reads, 5 experiments |
Evidence | experimental; Illumina [2] |
Predicted targets |
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References |
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1 |
PMID:15592404
"Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution"
Nature. 432:695-716(2004).
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2 |
PMID:23034410
"Birth and expression evolution of mammalian microRNA genes"
Genome Res. 23:34-45(2013).
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