Stem-loop sequence gga-mir-135a-3

Accession

MI0001264 (change log)

Description

Gallus gallus miR-135a-3 stem-loop

Gene family

MIPF0000028; mir-135

Literature search

8 open access papers mention gga-mir-135a-3
(10 sentences)

Stem-loop

   -----      g  --                 au          -   cu 
5'      cccucu cu  guggucuauggcuuuuu  uccuauguga uug  u
        |||||| ||  |||||||||||||||||  |||||||||| |||  u
3'      gggagg ga  caucggguaccgaaaag  gggauguacu aau  u
   ccuca      g  cu                 -c          c   cc 

Deep sequencing

27393 reads, 200 reads per million, 5 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Gallus_gallus-5.0; GCA_000002315.3): chr26: 2124003-2124098 [-]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:
• RNAcentral:URS000075B950_9031
• miRBase Tracker:MI0001264

Mature sequence gga-miR-135a-5p

• Accession: MIMAT0001099
• Sequence: 16 - uauggcuuuuuauuccuauguga - 38
• Deep sequencing: 75830 reads, 5 experiments
• Evidence: experimental; Illumina [2]
• Database links:
  • RNAcentral:URS00000DF6D0_9031
• Predicted targets:
  • TargetScanVert:gga-miR-135a-5p
  • miRDB:gga-miR-135a-5p

Mature sequence gga-miR-135a-3-3p

• Accession: MIMAT0031038
• Sequence: 55 - auguagggcgaaaagccauggg - 76
• Deep sequencing: 2118 reads, 5 experiments
• Evidence: experimental; Illumina [2]
• Predicted targets:
  • TargetScanVert:gga-miR-135a-3-3p
  • miRDB:gga-miR-135a-3-3p

References

1. PMID:15592404 "Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution" International Chicken Genome Sequencing Consortium Nature. 432:695-716(2004).
2. PMID:23034410 "Birth and expression evolution of mammalian microRNA genes" Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H Genome Res. 23:34-45(2013).