Stem-loop gga-mir-29c

Accession

MI0001265

Description

Gallus gallus gga-mir-29c precursor miRNA

Literature search

31 open access papers mention gga-mir-29c
(102 sentences)

Sequence

5702242 reads, 3004.0 reads per million, 255 experiments

ucucuuacacaggcUGACCGAUUUCUCUUGGUGUUCagagucucaguuucugucUAGCACCAUUUGAAAUCGGUUAUgauguaggggga
(((((((((((...(((((((((((...((((((((((((.......)))))...)))))))...))))))))))))).))))))))).

Structure

-         -  ggc           UCU       ---     uc 
 ucucuuaca ca   UGACCGAUUUC   UGGUGUU   Cagag  u
 ||||||||| ||   |||||||||||   |||||||   |||||  c
 gggggaugu gU   AUUGGCUAAAG   ACCACGA   gucuu  a
a         a  ---           UUU       Ucu     ug 

Annotation confidence High

Genome context

26: 2734711-2734799 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from gga-mir-29c

Mature gga-miR-29c-5p

• Accession: MIMAT0026544
• Description: Gallus gallus gga-miR-29c-5p mature miRNA
• Sequence: 15 - UGACCGAUUUCUCUUGGUGUUC - 36
• Evidence: experimental ; Illumina [2]

Mature gga-miR-29c-3p

• Accession: MIMAT0001183
• Description: Gallus gallus gga-miR-29c-3p mature miRNA
• Sequence: 55 - UAGCACCAUUUGAAAUCGGUUAU - 77
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 15592404
   Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
   "International Chicken Genome Sequencing Consortium"
   "Nature (2004) 432:695-716


2. 
   "McBride D, Carre W, Law A, Clinton M"
   (None) None:


3. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45