miRBase entry: gga-mir-23b

Stem-loop gga-mir-23b


Accession
MI0001273
Description
Gallus gallus gga-mir-23b precursor miRNA
Gene family
MIPF0000027; mir-23

Literature search
13 open access papers mention gga-mir-23b
(78 sentences)

Sequence

22008 reads, 268 reads per million, 5 experiments
uguuguggcuguuuGGGUUCCUGGCAUGAUGAUUUgugaguuaagauuaaaAUCACAUUGCCAGGGAUUACCacauagccaugacc
.(((((((((((.(((((((((((((((.((((((..............)))))))).))))))))))..))).))))))))))).

Structure
u           u   --          -  A      gugagu 
 guuguggcugu uGG  GUUCCUGGCA UG UGAUUU      u
 ||||||||||| |||  |||||||||| || ||||||       
 caguaccgaua aCC  UAGGGACCGU AC ACUAaa      a
c           c   AU          U  -      auuaga 


Annotation confidence High
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Genome context
chrZ: 41649166-41649251 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from gga-mir-23b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gga-miR-23b-3p

Accession MIMAT0001186
Description Gallus gallus gga-miR-23b-3p mature miRNA
Sequence 52 - AUCACAUUGCCAGGGAUUACC - 72
Evidence experimental
cloned [2], Illumina [3]
Database links
Predicted targets

Mature gga-miR-23b-5p

Accession MIMAT0026546
Description Gallus gallus gga-miR-23b-5p mature miRNA
Sequence 15 - GGGUUCCUGGCAUGAUGAUUU - 35
Evidence experimental
Illumina [3]

References

  1. PubMed ID: 15592404
    Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
    "International Chicken Genome Sequencing Consortium"
    "Nature (2004) 432:695-716

  2. PubMed ID: 18256158
    MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs
    "Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V"
    "J Virol (2008) 82:4007-4015

  3. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45