miRBase entry: dre-mir-181b-1

Stem-loop dre-mir-181b-1


Accession
MI0001366
Description
Danio rerio dre-mir-181b-1 precursor miRNA
Gene family
MIPF0000007; mir-181

Literature search
12 open access papers mention dre-mir-181b-1
(42 sentences)

Sequence

71877 reads, 4611 reads per million, 11 experiments
cauguacgcaccuucaguucuucaaaggucauaaucAACAUUCAUUGCUGUCGGUGGGuuuagucuuguaacagcucucugaacaaugaauguaacuguggcccagauu
..........................(((((((....((((((((((...((((.(((((..((......))))))).)))).))))))))))...)))))))......

Structure
cauguacgcaccuucaguucuucaaa       aucA          CUG    U     ua  cu 
                          ggucaua    ACAUUCAUUG   UCGG GGGuu  gu  u
                          |||||||    ||||||||||   |||| |||||  ||   
                          ccggugu    uguaaguaac   aguc cucga  ca  g
--------------------uuagac       -caa          --a    u     --  au 


Annotation confidence Not enough data
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Genome context
chr2: 45202223-45202331 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from dre-mir-181b-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dre-miR-181b-5p

Accession MIMAT0001270
Description Danio rerio dre-miR-181b-5p mature miRNA
Sequence 37 - AACAUUCAUUGCUGUCGGUGGG - 58
Evidence experimental
cloned [1-2]

References

  1. PubMed ID: 12624257
    Vertebrate microRNA genes
    "Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP"
    "Science (2003) 299:1540

  2. PubMed ID: 15937218
    The developmental miRNA profiles of zebrafish as determined by small RNA cloning
    "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
    "Genes Dev (2005) 19:1288-1293