miRBase entry: cbr-mir-64a

Stem-loop cbr-mir-64a


Accession
MI0001392
Description
Caenorhabditis briggsae cbr-mir-64a precursor miRNA


Sequence

ucaagaauccucggccucgccgacCAUGACACUGAAGCGUGUACGGAuggaaaguugaagccuuccguuccgcuagugugccaugcaacggcgagugccuuggcacuuug
.((((...((..((((((((((..((((.(((...((((.(.(((((.((..........)).))))).)))))...))).))))...))))))).)))..))...))))

Structure
u    aau  uc   -       -ac    A   UGA    U U     u  aaag 
 caag   cc  ggc cucgccg   CAUG CAC   AGCG G ACGGA gg    u
 ||||   ||  ||| |||||||   |||| |||   |||| | ||||| ||     
 guuu   gg  ccg gagcggc   guac gug   ucgc c ugccu cc    u
-    cac  uu   u       aac    c   uga    - u     u  gaag 


Annotation confidence Not enough data
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Comments
This miRNA is the predicted homologue of a verified C. elegans miRNA [1]. Its expression has not been verified in C. briggsae. The mature sequence differs from the elegans sequence at 3 positions.

Genome context
chrIII: 869205-869314 [-]
Clustered miRNAs
4 other miRNAs are < 10 kb from cbr-mir-64a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cbr-miR-64a

Accession MIMAT0001292
Description Caenorhabditis briggsae cbr-miR-64a mature miRNA
Sequence 25 - CAUGACACUGAAGCGUGUACGGA - 47
Evidence not_experimental

References

  1. PubMed ID: 12672692
    The microRNAs of Caenorhabditis elegans
    "Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB, Bartel DP"
    "Genes Dev (2003) 17:991-1008