miRNA Entry for MI0001398

Stem-loop sequence cbr-mir-51

Accession

Description

Caenorhabditis briggsae miR-51 stem-loop

Gene family

MIPF0000268; mir-51

Stem-loop

   cgucaucgaaucucaacgucaaacggauccgaagacguccaucuacc          ---u       ua    uaa  g gaa 
5'                                                cguagcuccu    gccaugu  cugg   aa u   c
                                                  ||||||||||    |||||||  ||||   || |   a
3'                                                guauugagga    cgguaca  ggcc   uu a   u
   -----------------------uuagaacuuuggaguugugcagaa          ugac       ug    ugg  g agg

Get sequence

Confidence

Annotation confidence: not enough data

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Comments

This miRNA is the predicted homologue of a verified C. elegans miRNA [1]. Its expression has not been verified in C. briggsae. The mature sequence differs from the elegans sequence at 2 positions.

Genome context

Coordinates (CB4; GCA_000004555.3)	Overlapping transcripts
chrIV: 7366589-7366733 [+]	intergenic

Clustered miRNAs

< 10kb from cbr-mir-51
cbr-mir-52	chrIV: 7363013-7363110 [+]
cbr-mir-51	chrIV: 7366589-7366733 [+]

Database links

RNAcentral:URS00007AE6EC_6238
miRBase Tracker:MI0001398

Mature sequence cbr-miR-51
Accession	MIMAT0001297
Sequence	44 - uacccguagcuccuugccauguu - 66 Get sequence
Evidence	by similarity; MI0000022

References
1	PMID:12672692 "The microRNAs of Caenorhabditis elegans" Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB, Bartel DP Genes Dev. 17:991-1008(2003).

miRBase

Stem-loop sequence cbr-mir-51

Mature sequence cbr-miR-51

References