Stem-loop cbr-mir-357-1

Accession

MI0001400

Description

Caenorhabditis briggsae cbr-mir-357-1 precursor miRNA

Gene family

MIPF0000227; mir-357

Sequence

cuacaucagaagagacagcgaaucccggcaaucaccgugcauuuucaucuaccagaggcacuaaugAAAAUGCCAGUCAUUGACGGAauucguugaaucuggaauuaaagcau
..........(((..((((((((.(((.((((.((.(.((((((((((...((...)).....))))))))))).)).)))).))).))))))))..))).............

Structure

---cuacaucaga   ga        c   g    c  c u          --cua  a 
             aga  cagcgaau ccg caau ac g gcauuuucau     cc  
             |||  |||||||| ||| |||| || | ||||||||||     || g
             ucu  guugcuua GGC GUUA UG C CGUAAAAgua     gg  
uacgaaauuaagg   aa        A   A    C  A -          aucac  a 

Annotation confidence Not enough data

Comments

This miRNA is the predicted homologue of a verified C. elegans miRNA [1]. Its expression has not been verified in C. briggsae. The mature sequence differs from the elegans sequence at 4 positions.

Genome context

chrIII: 7290280-7290392 [-]

Mature cbr-miR-357

• Accession: MIMAT0001298
• Description: Caenorhabditis briggsae cbr-miR-357 mature miRNA
• Sequence: 67 - AAAAUGCCAGUCAUUGACGGA - 87
• Evidence: not_experimental

References

1. PubMed ID: 15317971
   Patterns of flanking sequence conservation and a characteristic upstream motif for microRNA gene identification
   "Ohler U, Yekta S, Lim LP, Bartel DP, Burge CB"
   "RNA (2004) 10:1309-1322