Stem-loop sequence cbr-mir-357-1

Accession

MI0001400 (change log)

Previous IDs

cbr-mir-357

Description

Caenorhabditis briggsae miR-357-1 stem-loop

Gene family

MIPF0000227; mir-357

Stem-loop

   -----cuaca  aga   ga        c   g    c  c u          --cua    
5'           uc   aga  cagcgaau ccg caau ac g gcauuuucau     cca 
             ||   |||  |||||||| ||| |||| || | ||||||||||     || g
3'           ag   ucu  guugcuua ggc guua ug c cguaaaagua     gga 
   uacgaaauua  --g   aa        a   a    c  a -          aucac    

Confidence

Annotation confidence: not enough data

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Comments

This miRNA is the predicted homologue of a verified C. elegans miRNA [1]. Its expression has not been verified in C. briggsae. The mature sequence differs from the elegans sequence at 4 positions.

Genome context

• Coordinates (CB4; GCA_000004555.3): chrIII: 7290280-7290392 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0001400

Mature sequence cbr-miR-357

• Accession: MIMAT0001298
• Sequence: 67 - aaaaugccagucauugacgga - 87
• Evidence: by similarity; MI0000756

References

1. PMID:15317971 "Patterns of flanking sequence conservation and a characteristic upstream motif for microRNA gene identification" Ohler U, Yekta S, Lim LP, Bartel DP, Burge CB RNA. 10:1309-1322(2004).