miRBase entry: cbr-mir-358

Stem-loop cbr-mir-358

Accession

MI0001403

Description

Caenorhabditis briggsae cbr-mir-358 precursor miRNA

Sequence

acuccccauucggauugauacccgacuuccggauaccaaaugucauauccaacucguuucguCAAUUGGUAUCCUUAGUCGUGGucucaaucuguacacggcgagaguguugu
(((((((...((((((((.((((((((...(((((((((.((.(................).)).)))))))))..))))).))).)))))))).....)).).)))).....

Structure

-----    - -  --auu        u   -     ucc         a  u auaucca 
     acuc c cc     cggauuga acc cgacu   ggauaccaa ug c       a
     |||| | ||     |||||||| ||| |||||   ||||||||| || |        
     ugag g gg     gucuaacu uGG GCUGA   CCUAUGGUU AC g       c
uguug    a c  cacau        c   U     -UU         A  u cuuugcu

Annotation confidence Not enough data

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Comments

This miRNA is the predicted homologue of a verified C. elegans miRNA [1]. Its expression has not been verified in C. briggsae. The mature sequence differs from the elegans sequence at 4 positions.

Genome context

chrV: 1197871-1197983 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cbr-mir-358

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cbr-miR-358

Accession	MIMAT0001301
Description	Caenorhabditis briggsae cbr-miR-358 mature miRNA
Sequence	63 - CAAUUGGUAUCCUUAGUCGUGG - 84
Evidence	not_experimental

References

PubMed ID: 15317971
Patterns of flanking sequence conservation and a characteristic upstream motif for microRNA gene identification
"Ohler U, Yekta S, Lim LP, Bartel DP, Burge CB"
"RNA (2004) 10:1309-1322