miRBase entry: cbr-mir-360

Stem-loop cbr-mir-360


Accession
MI0001405
Description
Caenorhabditis briggsae cbr-mir-360 precursor miRNA
Gene family
MIPF0000210; mir-360


Sequence

uuccauaaaaaagcgccuaggguuuugugaccguuguuacggucaauucaugucugacacaaUGACCGUAAUCCCGUUCACAAcaccuuguguggcuugaauaaugaaauu
...(((....((((((.((((((.((((((.((..((((((((((..(((....))).....))))))))))..)).)))))).)))))).)).)))).....))).....

Structure
--uuc   -aaaa    -  c      u      c  uu          ---au   u 
     cau     aagc gc uagggu uuguga cg  guuacgguca     uca g
     |||     |||| || |||||| |||||| ||  ||||||||||     |||  
     gua     uucg ug guucca AACACU GC  UAAUGCCAGU     agu u
uuaaa   auaag    g  u      c      U  CC          aacac   c 


Annotation confidence Not enough data
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Comments
This miRNA is the predicted homologue of a verified C. elegans miRNA [1]. Its expression has not been verified in C. briggsae.

Genome context
chrX: 11259453-11259563 [+]

Database links

Mature cbr-miR-360

Accession MIMAT0001303
Description Caenorhabditis briggsae cbr-miR-360 mature miRNA
Sequence 63 - UGACCGUAAUCCCGUUCACAA - 83
Evidence not_experimental

References

  1. PubMed ID: 15317971
    Patterns of flanking sequence conservation and a characteristic upstream motif for microRNA gene identification
    "Ohler U, Yekta S, Lim LP, Bartel DP, Burge CB"
    "RNA (2004) 10:1309-1322