Stem-loop cbr-mir-360

Accession

MI0001405

Description

Caenorhabditis briggsae cbr-mir-360 precursor miRNA

Sequence

uuccauaaaaaagcgccuaggguuuugugaccguuguuacggucaauucaugucugacacaaUGACCGUAAUCCCGUUCACAAcaccuuguguggcuugaauaaugaaauu
...(((....((((((.((((((.((((((.((..((((((((((..(((....))).....))))))))))..)).)))))).)))))).)).)))).....))).....

Structure

--uuc   -aaaa    -  c      u      c  uu          ---au   u 
     cau     aagc gc uagggu uuguga cg  guuacgguca     uca g
     |||     |||| || |||||| |||||| ||  ||||||||||     |||  
     gua     uucg ug guucca AACACU GC  UAAUGCCAGU     agu u
uuaaa   auaag    g  u      c      U  CC          aacac   c 

Annotation confidence Not enough data

Comments

This miRNA is the predicted homologue of a verified C. elegans miRNA [1]. Its expression has not been verified in C. briggsae.

Genome context

chrX: 11259453-11259563 [+]

Mature cbr-miR-360

• Accession: MIMAT0001303
• Description: Caenorhabditis briggsae cbr-miR-360 mature miRNA
• Sequence: 63 - UGACCGUAAUCCCGUUCACAA - 83
• Evidence: not_experimental

References

1. PubMed ID: 15317971
   Patterns of flanking sequence conservation and a characteristic upstream motif for microRNA gene identification
   "Ohler U, Yekta S, Lim LP, Bartel DP, Burge CB"
   "RNA (2004) 10:1309-1322