miRBase entry: cbr-mir-239b

Stem-loop cbr-mir-239b

Accession

MI0001410

Description

Caenorhabditis briggsae cbr-mir-239b precursor miRNA

Gene family

MIPF0000135; mir-239

Sequence

uaggacagacaugcaauuuUUGUACUGCACAAAAGUACUGacuauuucucagcgcuuuuguccagugcaagaauggcaagagcugguccauuuuuuuagggauuaaacaauu
..((((((...(((.((((((((((((.((((((((.((((.......)))).)))))))).)))))))))))).)))....)).)))).......................

Structure

---------------------ua    -  -aca   a            C        A    cu 
                       ggac ag    ugc auuuUUGUACUG ACAAAAGU CUGa  a
                       |||| ||    ||| |||||||||||| |||||||| ||||  u
                       ccug uc    acg uaagaacgugac uguuuucg gacu  u
uuaacaaauuagggauuuuuuua    g  gaga   g            c        c    cu

Annotation confidence Not enough data

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Comments

This miRNA is the predicted homologue of a verified C. elegans miRNA [1]. Its expression has not been verified in C. briggsae. The mature sequence differs from the elegans sequence at 1 position.

Genome context

chrX: 15211379-15211490 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cbr-mir-239b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cbr-miR-239b

Accession	MIMAT0001308
Description	Caenorhabditis briggsae cbr-miR-239b mature miRNA
Sequence	20 - UUGUACUGCACAAAAGUACUG - 40
Evidence	not_experimental

References

PubMed ID: 12672692
The microRNAs of Caenorhabditis elegans
"Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB, Bartel DP"
"Genes Dev (2003) 17:991-1008