miRBase entry: cbr-mir-84

Stem-loop cbr-mir-84


Accession
MI0001413
Description
Caenorhabditis briggsae cbr-mir-84 precursor miRNA
Gene family
MIPF0000250; mir-84


Sequence

uugcuauauauucagccguacugucugaaaauaacaucUGAGGUAGUUUGCAAUGCUGUCgacguaacugaaaagucaacaucauuccaacuuccucggcuguucaaaaggcua
..(((........)))......((((......((((.((((((.((((.(.((((.(((.(((...........))).))).))))).)))).)))))).))))....))))..

Structure
uugcuauauauucagccguacu    gaaaau    u      U    U C    C   C   guaa 
                      gucu      aaca cUGAGG AGUU G AAUG UGU gac    c
                      ||||      |||| |||||| |||| | |||| ||| |||    u
                      cgga      uugu ggcucc ucaa c uuac aca cug    g
--------------------au    --aaac    c      u    c -    u   a   aaaa 


Annotation confidence Not enough data
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Comments
This miRNA is the predicted homologue of a verified C. elegans miRNA [1]. Its expression has not been verified in C. briggsae. The mature sequence differs from the elegans sequence at 4 positions.

Genome context
chrX: 796067-796180 [-]

Database links

Mature cbr-miR-84

Accession MIMAT0001311
Description Caenorhabditis briggsae cbr-miR-84 mature miRNA
Sequence 39 - UGAGGUAGUUUGCAAUGCUGUC - 60
Evidence not_experimental

References

  1. PubMed ID: 12672692
    The microRNAs of Caenorhabditis elegans
    "Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB, Bartel DP"
    "Genes Dev (2003) 17:991-1008