Stem-loop rno-mir-421

Accession

MI0001423

Description

Rattus norvegicus rno-mir-421 precursor miRNA

Literature search

6 open access papers mention rno-mir-421
(17 sentences)

Sequence

70567 reads, 93 reads per million, 491 experiments

cacacuguaGGCCUCAUUAAAUGUUUGUUGaaugaaaaaaugaaucAUCAACAGACAUUAAUUGGGcgccugcucugug
((((..((((((((((...((((((((((((.(((.........)))))))))))))))...)))).))))))..))))

Structure

    cu      -    UUA            a   aaa 
caca  guaGGC CUCA   AAUGUUUGUUGa uga   a
||||  |||||| ||||   |||||||||||| |||   a
gugu  cguccg GGGU   UUACAGACAACU Acu   u
    cu      c    UAA            -   aag 

Annotation confidence High

Genome context

chrX: 74443492-74443570 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from rno-mir-421

Mature rno-miR-421-5p

• Accession: MIMAT0001320
• Description: Rattus norvegicus rno-miR-421-5p mature miRNA
• Sequence: 10 - GGCCUCAUUAAAUGUUUGUUG - 30
• Evidence: experimental ; cloned [1], SOLiD [2]

Mature rno-miR-421-3p

• Accession: MIMAT0017175
• Description: Rattus norvegicus rno-miR-421-3p mature miRNA
• Sequence: 47 - AUCAACAGACAUUAAUUGGG - 66
• Evidence: experimental ; SOLiD [2]

References

1. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249


2. PubMed ID: 15345052
   Microarray analysis of microRNA expression in the developing mammalian brain
   Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P, Constantine-Paton M, Horvitz HR
   Genome Biol (2004) 5:R68