miRBase entry: rno-mir-421

Stem-loop rno-mir-421


Accession
MI0001423
Description
Rattus norvegicus rno-mir-421 precursor miRNA
Gene family
MIPF0000098; mir-95

Literature search
6 open access papers mention rno-mir-421
(17 sentences)

Sequence

70567 reads, 93 reads per million, 491 experiments
cacacuguaGGCCUCAUUAAAUGUUUGUUGaaugaaaaaaugaaucAUCAACAGACAUUAAUUGGGcgccugcucugug
((((..((((((((((...((((((((((((.(((.........)))))))))))))))...)))).))))))..))))

Structure
    cu      -    UUA            a   aaa 
caca  guaGGC CUCA   AAUGUUUGUUGa uga   a
||||  |||||| ||||   |||||||||||| |||   a
gugu  cguccg GGGU   UUACAGACAACU Acu   u
    cu      c    UAA            -   aag 


Annotation confidence High
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Genome context
chrX: 74443492-74443570 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from rno-mir-421
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rno-miR-421-5p

Accession MIMAT0001320
Description Rattus norvegicus rno-miR-421-5p mature miRNA
Sequence 10 - GGCCUCAUUAAAUGUUUGUUG - 30
Evidence experimental
cloned [1], SOLiD [2]

Mature rno-miR-421-3p

Accession MIMAT0017175
Description Rattus norvegicus rno-miR-421-3p mature miRNA
Sequence 47 - AUCAACAGACAUUAAUUGGG - 66
Evidence experimental
SOLiD [2]

References

  1. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249

  2. PubMed ID: 15345052
    Microarray analysis of microRNA expression in the developing mammalian brain
    Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P, Constantine-Paton M, Horvitz HR
    Genome Biol (2004) 5:R68