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miRBase |
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Stem-loop sequence osa-MIR417 |
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Accession | MI0001437 (change log) | ||||
Description | Oryza sativa miR417 stem-loop | ||||
Literature search |
4 open access papers mention osa-MIR417 | ||||
Stem-loop |
uu u ---a uuaa ucuu 5' ugg acaaauuug auuc auc a ||| ||||||||| |||| ||| u 3' acc uguuuaagu uaag uag a gu u gaug --ua uauu |
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Deep sequencing |
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Confidence |
Annotation confidence: not enough data
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Comments |
The status of this sequence as a miRNA has been questioned on the basis of lack of conservation in genomes other than Arabidopsis and rice, moderately poor precursor hairpin structure, lack of identified targets, and low Northern blot signal [2]. This sequence may therefore be removed in subsequent data releases. |
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Genome context |
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Database links |
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Mature sequence osa-miR417 |
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Accession | MIMAT0001333 |
Sequence |
44 - gaauguagugaauuuguucca - 64 |
Deep sequencing | 2 reads, 2 experiments |
Evidence | by similarity; MI0001428 |
References |
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1 |
PMID:15345049
"Prediction and identification of Arabidopsis thaliana microRNAs and their mRNA targets"
Genome Biol. 5:R65(2004).
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2 |
PMID:16669754
"MicroRNAS and their regulatory roles in plants"
Annu Rev Plant Biol. 57:19-53(2006).
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