miRBase entry: xla-mir-18a-1

Stem-loop xla-mir-18a-1

Accession

MI0001454

Description

Xenopus laevis xla-mir-18a-1 precursor miRNA

Gene family

MIPF0000001; mir-17

Literature search

2 open access papers mention xla-mir-18a-1
(4 sentences)

Sequence

ccuuguguUAAGGUGCAUCUAGUGCAGUUAGugacauagcguagcaucuacugcccuaaaugcuccuuuuggcacaggg
(((((((((((((.((((.(((.(((((..(((.(........))))..))))).))).)))).)))..))))))))))

Structure

          --   U    C   U     UA   a aua 
ccuuguguUA  AGG GCAU UAG GCAGU  Gug c   g
||||||||||  ||| |||| ||| |||||  ||| |    
gggacacggu  ucc cgua auc cguca  uac g   c
          uu   u    a   c     uc   - aug

Annotation confidence Not enough data

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Genome context

chr8L: 48822216-48822294 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from xla-mir-18a-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature xla-miR-18a-5p

Accession	MIMAT0001349
Description	Xenopus laevis xla-miR-18a-5p mature miRNA
Sequence	9 - UAAGGUGCAUCUAGUGCAGUUAG - 31
Evidence	experimental cloned [1]

References

PubMed ID: 15642338
Stage-specific expression of microRNAs during Xenopus development
"Watanabe T, Takeda A, Mise K, Okuno T, Suzuki T, Minami N, Imai H"
"FEBS Lett (2005) 579:318-324