miRBase entry: zma-MIR164b

Stem-loop zma-MIR164b


Accession
MI0001471
Description
Zea mays zma-MIR164b precursor miRNA
Gene family
MIPF0000045; MIR164

Literature search
29 open access papers mention zma-MIR164b
(230 sentences)

Sequence

1586 reads, 3176 reads per million, 4 experiments
uagacgguggcugugcguggUGGAGAAGCAGGGCACGUGCAuuaccauccaaugccgccggguggguggguggaauggauggaugguucuugAUGUGCCCAUCUUCUCCACCgagcacgaacugucuu
.(((((((...(((((.(((((((((((..((((((((.....((((((((...(((((.(.....).)))))......)))))))).....))))))))..))))))))))).))))).))))))).

Structure
u       ggc     g           CA        GCAuu        ---aug     g g 
 agacggu   ugugc uggUGGAGAAG  GGGCACGU     accaucca      ccgcc g u
 |||||||   ||||| |||||||||||  ||||||||     ||||||||      ||||| | g
 ucuguca   gcacg gCCACCUCUUC  CCCGUGUA     ugguaggu      ggugg u g
u       --a     a           UA        guucu        agguaa     g g 


Annotation confidence Not enough data
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Genome context
chr6: 145727415-145727542 [+]

Database links

Mature zma-miR164b-5p

Accession MIMAT0001366
Description Zea mays zma-miR164b-5p mature miRNA
Sequence 21 - UGGAGAAGCAGGGCACGUGCA - 41
Evidence experimental
Illumina [2]
Database links

Mature zma-miR164b-3p

Accession MIMAT0015138
Description Zea mays zma-miR164b-3p mature miRNA
Sequence 93 - AUGUGCCCAUCUUCUCCACC - 112
Evidence experimental
Illumina [2]

References

  1. Identifying microRNAs in plant genomes
    "Maher C, Timmermans M, Stein L, Ware D"
    "Proc IEEE CSB (2004) None:718-723

  2. PubMed ID: 19936050
    A genome-wide characterization of microRNA genes in maize
    Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
    PLoS Genet (2009) 5:e1000716