Stem-loop sequence zma-MIR169a

Accession

MI0001473 (change log)

Description

Zea mays miR169a stem-loop

Gene family

MIPF0000037; MIR169_2

Literature search

30 open access papers mention zma-MIR169a
(217 sentences)

Stem-loop

       cu    ga        c         ug         ucgaugugacgccucuugaucuc 
5' uagg  cggg  cuauggug agccaagga  acuugccga                       g
   ||||  ||||  |||||||| |||||||||  |||||||||                        
3' gucc  gucc  ggugccac ucgguucuu  ugaacggcu                       u
       uc    uc        a         gu         acuagccgcugcuagacugcugc 

Deep sequencing

2723 reads, 1.58e+03 reads per million, 173 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (B73_RefGen_v4; GCA_000005005.6): chr3: 37346686-37346815 [+]
• Overlapping transcripts:

  intergenic

Database links

• RNAcentral:URS000075D8A5_4577
• miRBase Tracker:MI0001473

Mature sequence zma-miR169a-5p

• Accession: MIMAT0001368
• Previous IDs: zma-miR169a
• Sequence: 21 - cagccaaggaugacuugccga - 41
• Deep sequencing: 1140 reads, 25 experiments
• Evidence: experimental; Illumina [2]
• Database links:
  • RNAcentral:URS000052B358_4577

Mature sequence zma-miR169a-3p

• Accession: MIMAT0015140
• Previous IDs: zma-miR169a*
• Sequence: 92 - ggcaaguuguucuuggcuaca - 112
• Deep sequencing: 80 reads, 10 experiments
• Evidence: experimental; Illumina [2]
• Database links:
  • RNAcentral:URS000075CD1D_4577

References

1. "Identifying microRNAs in plant genomes" Maher C, Timmermans M, Stein L, Ware D Proc IEEE CSB :718-723(2004).
2. PMID:19936050 "A genome-wide characterization of microRNA genes in maize" Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D PLoS Genet. 5:e1000716(2009).