miRBase entry: zma-MIR169a

Stem-loop zma-MIR169a


Accession
MI0001473
Description
Zea mays zma-MIR169a precursor miRNA
Gene family
MIPF0000037; MIR169_2

Literature search
30 open access papers mention zma-MIR169a
(221 sentences)

Sequence

602 reads, 2201 reads per million, 6 experiments
uaggcucggggacuauggugCAGCCAAGGAUGACUUGCCGAucgaugugacgccucuugaucucgucgucgucagaucgucgccgaucaucGGCAAGUUGUUCUUGGCUACAccguggcuccugcuccug
((((..(((((.((((((((.(((((((((((((((((((((.(((((((((..(((((((......))))..))).))))))..)))))))))))))))))))))))).)))))))).)))))..))))

Structure
    cu     a        C                     c   --      cc   --    cu 
uagg  cgggg cuauggug AGCCAAGGAUGACUUGCCGAu gau  gugacg  ucu  ugau  c
||||  ||||| |||||||| ||||||||||||||||||||| |||  ||||||  |||  ||||   
gucc  guccu ggugccAC UCGGUUCUUGUUGAACGGcua cua  cgcugc  aga  gcug  g
    uc     c        A                     -   gc      -u   cu    cu 


Annotation confidence Not enough data
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Genome context
chr3: 37346686-37346815 [+]

Database links

Mature zma-miR169a-5p

Accession MIMAT0001368
Description Zea mays zma-miR169a-5p mature miRNA
Sequence 21 - CAGCCAAGGAUGACUUGCCGA - 41
Evidence experimental
Illumina [2]
Database links

Mature zma-miR169a-3p

Accession MIMAT0015140
Description Zea mays zma-miR169a-3p mature miRNA
Sequence 92 - GGCAAGUUGUUCUUGGCUACA - 112
Evidence experimental
Illumina [2]
Database links

References

  1. Identifying microRNAs in plant genomes
    "Maher C, Timmermans M, Stein L, Ware D"
    "Proc IEEE CSB (2004) None:718-723

  2. PubMed ID: 19936050
    A genome-wide characterization of microRNA genes in maize
    Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
    PLoS Genet (2009) 5:e1000716