Stem-loop zma-MIR166e

Accession

MI0001483

Description

Zea mays zma-MIR166e precursor miRNA

Literature search

33 open access papers mention zma-MIR166e
(194 sentences)

Sequence

143220 reads, 20550.0 reads per million, 115 experiments

ggGGAAUGUUGUCUGGCUCGAGGUgcagaaacauacagaucucaucggucuagguucuugucgaucUCGGACCAGGCUUCAUUCCCC
((((((((..((((((.(((((((((((.(((....(((((.....)))))..))).))))..))))))).))))))..))))))))

Structure

        UU      C       --    a   auac     u 
ggGGAAUG  GUCUGG UCGAGGU  gcag aac    agauc c
||||||||  |||||| |||||||  |||| |||    ||||| a
CCCCUUAC  CGGACC GGCUcua  uguu uug    ucugg u
        UU      A       gc    c   --ga     c 

Annotation confidence High

Genome context

5: 194582789-194582875 [+]

Mature zma-miR166e-5p

• Accession: MIMAT0056563
• Description: Zea mays zma-miR166e-5p mature miRNA
• Sequence: 3 - GGAAUGUUGUCUGGCUCGAGGU - 24
• Evidence: experimental ; unknown

Mature zma-miR166e-3p

• Accession: MIMAT0001378
• Description: Zea mays zma-miR166e-3p mature miRNA
• Sequence: 67 - UCGGACCAGGCUUCAUUCCCC - 87
• Evidence: not_experimental

References

1. Identifying microRNAs in plant genomes
   "Maher C, Timmermans M, Stein L, Ware D"
   "Proc IEEE CSB (2004) None:718-723


2. PubMed ID: 15916721
   Identification and characterization of new plant microRNAs using EST analysis
   "Zhang BH, Pan XP, Wang QL, Cobb GP, Anderson TA"
   "Cell Res (2005) 15:336-360