miRBase entry: sbi-MIR172b

Stem-loop sbi-MIR172b


Accession
MI0001501
Description
Sorghum bicolor sbi-MIR172b precursor miRNA
Gene family
MIPF0000035; MIR172

Literature search
4 open access papers mention sbi-MIR172b
(30 sentences)

Sequence

gcguggcaucaucaagauucacacacugcuugcaaaugcauacaugcaucucugccgccuucuuugccugccauuaauagcaguuuuacuacauguuuuagcugcugcugcaucauauaugccucugugaauauauauguguaugugugGGAAUCUUGAUGAUGCUGCAu
..((((((((((((((((((.(((((.((..(((((((((....)))))..............))))..))......((((((((..((.....))...)))))))).((((.((((((((..........)))))))))))).))))).))))))))))))))))))..

Structure
gc                  a     ugcuugcaaaugcauacaugcaucucugccgccuucuuugccugccauuaauagcaguuuuacuacauguuuuagcugcugc    u        ccuc 
  guggcaucaucaagauuc cacac                                                                                  ugca cauauaug    u
  |||||||||||||||||| |||||                                                                                  |||| ||||||||     
  CGUCGUAGUAGUUCUAAG gugug                                                                                  augu guauauau    g
uA                  G     ---------------------------------------------------------------------------------u    -        aagu 


Annotation confidence Not enough data
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Genome context
chr3: 74188339-74188508 [-]

Database links

Mature sbi-miR172b

Accession MIMAT0001395
Description Sorghum bicolor sbi-miR172b mature miRNA
Sequence 150 - GGAAUCUUGAUGAUGCUGCA - 169
Evidence not_experimental

References

  1. Identifying microRNAs in plant genomes
    "Maher C, Timmermans M, Stein L, Ware D"
    "Proc IEEE CSB (2004) None:718-723

  2. PubMed ID: 15660154
    Sorghum genome sequencing by methylation filtration
    Bedell JA, Budiman MA, Nunberg A, Citek RW, Robbins D, Jones J, Flick E, Rholfing T, Fries J, Bradford K, McMenamy J, Smith M, Holeman H, Roe BA, Wiley G, Korf IF, Rabinowicz PD, Lakey N, McCombie WR, Jeddeloh JA, Martienssen RA
    PLoS Biol (2005) 3:e13