Stem-loop sequence sbi-MIR172c

Accession

MI0001502 (change log)

Description

Sorghum bicolor miR172c stem-loop

Gene family

MIPF0000035; MIR172

Literature search

4 open access papers mention sbi-MIR172c
(37 sentences)

Stem-loop

           c           a   gguccaacucaugcaucuucagugaugcucaugu 
5' gugcagca caucaagauuc cau                                  g
   |||||||| ||||||||||| |||                                  a
3' uacgucgu guaguucuaag gua                                  u
           a           a   gaguaguguauacguauauaucguugacgcucgg 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Sorghum_bicolor_NCBIv3; GCA_000003195.3): chr4: 67645991-67646109 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0001502

Mature sequence sbi-miR172c

• Accession: MIMAT0001396
• Sequence: 99 - agaaucuugaugaugcugca - 118
• Evidence: by similarity; MI0000216

References

1. "Identifying microRNAs in plant genomes" Maher C, Timmermans M, Stein L, Ware D Proc IEEE CSB :718-723(2004).
2. PMID:15660154 "Sorghum genome sequencing by methylation filtration" Bedell JA, Budiman MA, Nunberg A, Citek RW, Robbins D, Jones J, Flick E, Rholfing T, Fries J, Bradford K, McMenamy J, Smith M, Holeman H, Roe BA, Wiley G, Korf IF, Rabinowicz PD, Lakey N, McCombie WR, Jeddeloh JA, Martienssen RA PLoS Biol. 3:e13(2005).