miRBase entry: sbi-MIR172a

Stem-loop sbi-MIR172a


Accession
MI0001503
Description
Sorghum bicolor sbi-MIR172a precursor miRNA
Gene family
MIPF0000035; MIR172

Literature search
6 open access papers mention sbi-MIR172a
(35 sentences)

Sequence

gugcagcaucaucaagauucacauccagcucauccucggugauaugcuauauacauaaauauaugcguaugugaugagaugAGAAUCUUGAUGAUGCUGCAu
((((((((((((((((((((.((((....(((((.......(((((((((((......))))).))))))..))))))))).))))))))))))))))))))

Structure
                    a    cagc     cucggug      -     ac 
gugcagcaucaucaagauuc cauc    ucauc       auaugc uauau  a
|||||||||||||||||||| ||||    |||||       |||||| |||||   
uACGUCGUAGUAGUUCUAAG guag    aguag       uaugcg auaua  u
                    A    ----     -----ug      u     aa 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr9: 58774558-58774659 [-]

Database links

Mature sbi-miR172a

Accession MIMAT0001397
Description Sorghum bicolor sbi-miR172a mature miRNA
Sequence 82 - AGAAUCUUGAUGAUGCUGCA - 101
Evidence not_experimental

References

  1. Identifying microRNAs in plant genomes
    "Maher C, Timmermans M, Stein L, Ware D"
    "Proc IEEE CSB (2004) None:718-723

  2. PubMed ID: 15660154
    Sorghum genome sequencing by methylation filtration
    Bedell JA, Budiman MA, Nunberg A, Citek RW, Robbins D, Jones J, Flick E, Rholfing T, Fries J, Bradford K, McMenamy J, Smith M, Holeman H, Roe BA, Wiley G, Korf IF, Rabinowicz PD, Lakey N, McCombie WR, Jeddeloh JA, Martienssen RA
    PLoS Biol (2005) 3:e13