Stem-loop sequence sbi-MIR156c

Accession

MI0001505 (change log)

Description

Sorghum bicolor miR156c stem-loop

Gene family

MIPF0000008; MIR156

Literature search

8 open access papers mention sbi-MIR156c
(25 sentences)

Stem-loop

   u      -     -        a      gccu   uu      ugaau 
5'  gacaga agaga gugagcac cauggu    uuc  gcauga     g
    |||||| ||||| |||||||| ||||||    |||  ||||||     a
3'  cugucu ucucu cacucgug guaucg    aag  cguacu     g
   a      c     u        c      ----   cu      uaggu 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Sorghum_bicolor_NCBIv3; GCA_000003195.3): chr3: 3416227-3416321 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from sbi-MIR156c

• sbi-MIR156c: chr3: 3416227-3416321 [-]
• sbi-MIR156b: chr3: 3415906-3415989 [-]

Database links

• RNAcentral:URS00007B1B3D_4558
• miRBase Tracker:MI0001505

Mature sequence sbi-miR156c

• Accession: MIMAT0001399
• Sequence: 1 - ugacagaagagagugagcac - 20
• Evidence: by similarity; MI0000182

References

1. "Identifying microRNAs in plant genomes" Maher C, Timmermans M, Stein L, Ware D Proc IEEE CSB :718-723(2004).
2. PMID:15660154 "Sorghum genome sequencing by methylation filtration" Bedell JA, Budiman MA, Nunberg A, Citek RW, Robbins D, Jones J, Flick E, Rholfing T, Fries J, Bradford K, McMenamy J, Smith M, Holeman H, Roe BA, Wiley G, Korf IF, Rabinowicz PD, Lakey N, McCombie WR, Jeddeloh JA, Martienssen RA PLoS Biol. 3:e13(2005).