Stem-loop sequence sbi-MIR160a

Accession

MI0001508 (change log)

Description

Sorghum bicolor miR160a stem-loop

Gene family

MIPF0000032; MIR160

Literature search

3 open access papers mention sbi-MIR160a
(13 sentences)

Stem-loop

   u  c       c          a   -    cc     caua 
5'  gc uggcucc uguaugccac cau guag  caacc    u
    || ||||||| |||||||||| ||| ||||  |||||     
3'  cg accgggg acgugcggug gug cguc  guugg    g
   a  a       a          g   u    -c     aauc 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Sorghum_bicolor_NCBIv3; GCA_000003195.3): chr4: 4215241-4215324 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0001508

Mature sequence sbi-miR160a

• Accession: MIMAT0001402
• Sequence: 1 - ugccuggcucccuguaugcca - 21
• Evidence: by similarity; MI0000192

References

1. "Identifying microRNAs in plant genomes" Maher C, Timmermans M, Stein L, Ware D Proc IEEE CSB :718-723(2004).
2. PMID:15660154 "Sorghum genome sequencing by methylation filtration" Bedell JA, Budiman MA, Nunberg A, Citek RW, Robbins D, Jones J, Flick E, Rholfing T, Fries J, Bradford K, McMenamy J, Smith M, Holeman H, Roe BA, Wiley G, Korf IF, Rabinowicz PD, Lakey N, McCombie WR, Jeddeloh JA, Martienssen RA PLoS Biol. 3:e13(2005).