miRBase entry: sbi-MIR167a

Stem-loop sbi-MIR167a


Accession
MI0001513
Description
Sorghum bicolor sbi-MIR167a precursor miRNA
Gene family
MIPF0000023; MIR167_1

Literature search
3 open access papers mention sbi-MIR167a
(6 sentences)

Sequence

UGAAGCUGCCAGCAUGAUCUAgcucugagugaucacccgagaagaacaauaguucgagguggucucgccuugcuaggucaugcugcggcagccuca
(((.(((((((((((((((((((.....(.(((((((((((...........)))).))))))).).....)))))))))))))..)))))).)))

Structure
   A      --             ucuga u       -    aaga 
UGA GCUGCC  AGCAUGAUCUAgc     g gaucacc cgag    a
||| ||||||  |||||||||||||     | ||||||| ||||    c
acu cgacgg  ucguacuggaucg     c cuggugg gcuu    a
   c      cg             uuccg u       a    gaua 


Annotation confidence Not enough data
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Genome context
chr1: 4354010-4354105 [+]

Database links

Mature sbi-miR167a

Accession MIMAT0001407
Description Sorghum bicolor sbi-miR167a mature miRNA
Sequence 1 - UGAAGCUGCCAGCAUGAUCUA - 21
Evidence not_experimental

References

  1. Identifying microRNAs in plant genomes
    "Maher C, Timmermans M, Stein L, Ware D"
    "Proc IEEE CSB (2004) None:718-723

  2. PubMed ID: 15660154
    Sorghum genome sequencing by methylation filtration
    Bedell JA, Budiman MA, Nunberg A, Citek RW, Robbins D, Jones J, Flick E, Rholfing T, Fries J, Bradford K, McMenamy J, Smith M, Holeman H, Roe BA, Wiley G, Korf IF, Rabinowicz PD, Lakey N, McCombie WR, Jeddeloh JA, Martienssen RA
    PLoS Biol (2005) 3:e13