miRBase entry: sbi-MIR169a

Stem-loop sbi-MIR169a


Accession
MI0001516
Description
Sorghum bicolor sbi-MIR169a precursor miRNA
Gene family
MIPF0000037; MIR169_2

Literature search
4 open access papers mention sbi-MIR169a
(23 sentences)

Sequence

CAGCCAAGGAUGACUUGCCGAucgaucgaugcaaacuccucugaugucugaucucaucagauuaucguugucggcaaguuguucuuggcua
.((((((((((((((((((((.(((.(((((........(((((((........))))))).)))))))))))))))))))))))))))).

Structure
C                    u   u     caaacucc       ucu 
 AGCCAAGGAUGACUUGCCGA cga cgaug        ucugaug   g
 |||||||||||||||||||| ||| |||||        |||||||    
 ucgguucuuguugaacggcu guu gcuau        agacuac   a
a                    -   -     -------u       ucu 


Annotation confidence Not enough data
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Genome context
chr3: 10749535-10749625 [+]

Database links

Mature sbi-miR169a

Accession MIMAT0001410
Description Sorghum bicolor sbi-miR169a mature miRNA
Sequence 1 - CAGCCAAGGAUGACUUGCCGA - 21
Evidence not_experimental

References

  1. Identifying microRNAs in plant genomes
    "Maher C, Timmermans M, Stein L, Ware D"
    "Proc IEEE CSB (2004) None:718-723

  2. PubMed ID: 15660154
    Sorghum genome sequencing by methylation filtration
    Bedell JA, Budiman MA, Nunberg A, Citek RW, Robbins D, Jones J, Flick E, Rholfing T, Fries J, Bradford K, McMenamy J, Smith M, Holeman H, Roe BA, Wiley G, Korf IF, Rabinowicz PD, Lakey N, McCombie WR, Jeddeloh JA, Martienssen RA
    PLoS Biol (2005) 3:e13