miRBase entry: oar-mir-127

Stem-loop oar-mir-127


Accession
MI0001521
Description
Ovis aries oar-mir-127 precursor miRNA
Gene family
MIPF0000080; mir-127

Literature search
10 open access papers mention oar-mir-127
(28 sentences)

Sequence

4617 reads, 827 reads per million, 13 experiments
gcuuugaucacugucuccagccugcugaagcucagagggcucugauucagaaagaucAUCGGAUCCGUCUGAGCUUGGCUggucggaagucuccucaucugcuuccuucggguu
................((((((.....(((((((((.((.((((((((.....))..)))))).)).)))))))))))))))..((((((..........))))))........

Structure
----------------gcuuugaucacugucu      ugcug         g  c      --  a 
                                ccagcc     aagcucaga gg ucugau  uc g
                                ||||||     ||||||||| || ||||||  || a
                                ggUCGG     UUCGAGUCU CC AGGCUA  ag a
uugggcuuccuucgucuacuccucugaaggcu      -----         G  U      cu  a 


Annotation confidence Not enough data
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Genome context
chr18: 64385295-64385408 [+]
Clustered miRNAs
5 other miRNAs are < 10 kb from oar-mir-127
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oar-miR-127

Accession MIMAT0001415
Description Ovis aries oar-miR-127 mature miRNA
Sequence 58 - AUCGGAUCCGUCUGAGCUUGGCU - 80
Evidence experimental
PCR [1]

References

  1. PubMed ID: 15854907
    RNAi-mediated allelic trans-interaction at the imprinted Rtl1/Peg11 locus
    "Davis E, Caiment F, Tordoir X, Cavaille J, Ferguson-Smith A, Cockett N, Georges M, Charlier C"
    "Curr Biol (2005) 15:743-749