miRBase entry: oar-mir-136

Stem-loop oar-mir-136


Accession
MI0001523
Description
Ovis aries oar-mir-136 precursor miRNA
Gene family
MIPF0000099; mir-136

Literature search
6 open access papers mention oar-mir-136
(9 sentences)

Sequence

15180 reads, 2462 reads per million, 13 experiments
ucggaugagcccucggaggACUCCAUUUGUUUUGAUGAUGGAuucuuacgcuccaucaucgucucaaaugagucuucagaggguucuaucau
...(((((((((((.((((((((.(((((...((((((((((.........))))))))))...))))))))))))).)))))))).)))..

Structure
ucg   -        g        C     UUU          uuc 
   gau gagcccuc gaggACUC AUUUG   UGAUGAUGGA   u
   ||| |||||||| |||||||| |||||   ||||||||||   u
   cua cuugggag cuucugag uaaac   gcuacuaccu   a
-ua   u        a        -     ucu          cgc 


Annotation confidence Not enough data
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Genome context
chr18: 64386976-64387067 [+]
Clustered miRNAs
5 other miRNAs are < 10 kb from oar-mir-136
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oar-miR-136

Accession MIMAT0001417
Description Ovis aries oar-miR-136 mature miRNA
Sequence 20 - ACUCCAUUUGUUUUGAUGAUGGA - 42
Evidence experimental
PCR [1]

References

  1. PubMed ID: 15854907
    RNAi-mediated allelic trans-interaction at the imprinted Rtl1/Peg11 locus
    "Davis E, Caiment F, Tordoir X, Cavaille J, Ferguson-Smith A, Cockett N, Georges M, Charlier C"
    "Curr Biol (2005) 15:743-749