miRBase entry: sbi-MIR396c

Stem-loop sbi-MIR396c


Accession
MI0001540
Description
Sorghum bicolor sbi-MIR396c precursor miRNA
Gene family
MIPF0000047; MIR396

Literature search
3 open access papers mention sbi-MIR396c
(9 sentences)

Sequence

uucaaguccaugccaugccuUUCCACAGCUUUCUUGAACUUcuccuccuccuccucucucuuagaaggguagcuuugaacaucucucucucucucucucucucucucucucucucuccaaagaaggucaagaaagcugugggaagaaaugacauaacaagga
......((((((.(((..(((((((((((((((((((.(((((.......(((((.(((...))).))).))....((.....))...................................))))).)))))))))))))))))))..))).))).....)))

Structure
uucaag   -----   c   gc                   A     -----------------------------------------ccuccuc  -   c   c 
      ucc     aug cau  cuUUCCACAGCUUUCUUGA CUUcu                                                cu ccu ucu  
      |||     ||| |||  ||||||||||||||||||| |||||                                                || ||| ||| u
      agg     uac gua  gaagggugucgaaagaacu gaaga                                                ga ggg aga  
------   aacaa   a   aa                   g     aaccucucucucucucucucucucucucucucucucucuacaaguuuc  u   a   u 


Annotation confidence Not enough data
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Genome context
chr4: 66726748-66726909 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from sbi-MIR396c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature sbi-miR396c

Accession MIMAT0001436
Description Sorghum bicolor sbi-miR396c mature miRNA
Sequence 21 - UUCCACAGCUUUCUUGAACUU - 41
Evidence not_experimental

References

  1. Conservation and divergence of microRNA families in plants
    "Dezulian T, Palatnik JF, Huson DH, Weigel D"
    Genome Biol. (2005) 6:P13