miRBase entry: sbi-MIR399d

Stem-loop sbi-MIR399d


Accession
MI0001543
Description
Sorghum bicolor sbi-MIR399d precursor miRNA
Gene family
MIPF0000015; MIR399

Literature search
3 open access papers mention sbi-MIR399d
(5 sentences)

Sequence

gugcaggcugaagacaguuguaggcagcucuccucuggcaggcggucaucgucgucgucaucgacggcugguucuguguucauccggauccaucgugcagccgugcaugcaugcaguaauauucgguuacaugcaugcauuaugcacgcacguacgucgucguccUGCCAAAGGAGAGUUGCCCUGcgacugucuccagcuuccu
....((((((.(((((((((((((((((((((((.((((((((((.(...(((((((....)))))))(((.((((........)))).))).(((((...(((((((((((((((((((.....))))).))))))))...))))))...)))))..)))).))))))).)))))))))).))))))))))))).))))))...

Structure
gugc      a             -          c       -   u aucgucgucgucaucgacggcugguucuguguucauccggauccau     agc      ---        -     a 
    aggcug agacaguuguagg cagcucuccu uggcagg cgg c                                              cgugc   cgugca   ugcaugca guaau u
    |||||| ||||||||||||| |||||||||| ||||||| ||| |                                              |||||   ||||||   |||||||| ||||| u
    uucgac ucugucagcGUCC GUUGAGAGGA ACCGUcc gcu g                                              gcaug   gcacgu   acguacgu cauug c
-ucc      c             C          A       u   - --------------------------------------------cu     cac      auu        a     g 


Annotation confidence Not enough data
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Genome context
chr10: 1578286-1578490 [+]

Database links

Mature sbi-miR399d

Accession MIMAT0001439
Description Sorghum bicolor sbi-miR399d mature miRNA
Sequence 166 - UGCCAAAGGAGAGUUGCCCUG - 186
Evidence not_experimental

References

  1. Conservation and divergence of microRNA families in plants
    "Dezulian T, Palatnik JF, Huson DH, Weigel D"
    Genome Biol. (2005) 6:P13