miRBase entry: sbi-MIR159a

Stem-loop sbi-MIR159a


Accession
MI0001572
Description
Sorghum bicolor sbi-MIR159a precursor miRNA
Gene family
MIPF0000010; MIR159

Literature search
3 open access papers mention sbi-MIR159a
(3 sentences)

Sequence

agcgaagcuccuaucauuccaaugaagggcccuuuucaugggugguuccgcugcucguucaugguucccacuauccuaucucaucauguauguguguauguacucuagagggcccgagaagagauucauguggucgucagucuuugagauaggcuugugguuugcaugaccgaggagcugcaccguccccuugcuggccgcucUUUGGAUUGAAGGGAGCUCUGca
.(((.(((((((.(((.(((((.((..((((.....((.(((((((.(.(((.((((.(((((....((((...(((((((((....((((((....))))))....((.((((((.(((....))).)).)))).))......)))))))))...))))....))))).)))).))).).)))).)))..))..))))..)).))))).))).))))))).))).

Structure
a   a       a   u     u  ag    cuuuu  -u   -    u c   g    u     guuc    uau         ucauguauguguguauguacucua  g    -  a   g 
 gcg agcuccu uca uccaa ga  ggcc     ca  ggg uggu c gcu cucg ucaug    ccac   ccuaucuca                        ga ggcc cg gaa a
 ||| ||||||| ||| ||||| ||  ||||     ||  ||| |||| | ||| |||| |||||    ||||   |||||||||                        || |||| || |||  
 cGU UCGAGGG AGU AGGUU cu  ccgg     gu  ccc gcca g cga gagc aguac    ggug   ggauagagu                        cu cugg gu cuu g
a   C       A   U     U  cg    ---uc  uc   u    c u   g    c     guuu    uuc         ------------------uucuga  g    u  a   a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature sbi-miR159a

Accession MIMAT0001468
Description Sorghum bicolor sbi-miR159a mature miRNA
Sequence 204 - UUUGGAUUGAAGGGAGCUCUG - 224
Evidence not_experimental

References

  1. PubMed ID: 15916721
    Identification and characterization of new plant microRNAs using EST analysis
    "Zhang BH, Pan XP, Wang QL, Cobb GP, Anderson TA"
    "Cell Res (2005) 15:336-360

  2. Conservation and divergence of microRNA families in plants
    "Dezulian T, Palatnik JF, Huson DH, Weigel D"
    Genome Biol. (2005) 6:P13