miRBase entry: cfa-mir-449a

Stem-loop cfa-mir-449a


Accession
MI0001651
Description
Canis familiaris cfa-mir-449a precursor miRNA
Gene family
MIPF0000133; mir-449


Sequence

ccgugugugauggguUGGCAGUGUAUUGUUAGCUGGUugaauauaugaauggcaucagcuaacaugcaacugcuaucuuauugcauauaca
..((((((((((((.(((((((((((.((((((((((...((......))...)))))))))))))).))))))).))))))))))))...

Structure
-cc            u       -    U          uga  au 
   gugugugauggg UGGCAGU GUAU GUUAGCUGGU   au  a
   |||||||||||| ||||||| |||| ||||||||||   ||   
   uauacguuauuc aucguca cgua caaucgacua   ua  u
aca            u       a    -          cgg  ag 


Annotation confidence Not enough data
Do you think this miRNA is real?
Comments
Xie et al. [1] refer to this sequence by the internal identifier MIR54. The sequence is unrelated to C. elegans mir-54 (MIR:MI0000025).

Genome context
chr2: 42541949-42542039 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from cfa-mir-449a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cfa-miR-449a

Accession MIMAT0001544
Description Canis familiaris cfa-miR-449a mature miRNA
Sequence 16 - UGGCAGUGUAUUGUUAGCUGGU - 37
Evidence experimental
cloned [1]

References

  1. PubMed ID: 15735639
    Systematic discovery of regulatory motifs in human promoters and 3' UTRs by comparison of several mammals
    "Xie X, Lu J, Kulbokas EJ, Golub TR, Mootha V, Lindblad-Toh K, Lander ES, Kellis M"
    "Nature (2005) 434:338-345