miRBase entry: cfa-mir-450a

Stem-loop cfa-mir-450a


Accession
MI0001655
Description
Canis familiaris cfa-mir-450a precursor miRNA
Gene family
MIPF0000128; mir-450


Sequence

gaaagaugcugaacugUUUUUGCGAUGUGUUCCUAAUAugcaguaugaacauauugggagcauuuugcaugcaugguuuuguaucaauaua
....(((((.(((((((...(((((.((((((((((((((.........)))))))))))))).)))))...))))))).)))))......

Structure
--gaaa     u       UUU     U              cag 
      gaugc gaacugU   UGCGA GUGUUCCUAAUAug   u
      ||||| |||||||   ||||| ||||||||||||||   a
      cuaug uuuggua   acguu uacgaggguuauac   u
auauaa     u       cgu     u              aag 


Annotation confidence Not enough data
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Comments
Xie et al. [1] refer to this sequence by the internal identifier MIR238. The sequence is unrelated to C. elegans mir-238 (MIR:MI0000313).

Genome context
chrX: 105177439-105177529 [-]
Clustered miRNAs
4 other miRNAs are < 10 kb from cfa-mir-450a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cfa-miR-450a

Accession MIMAT0001548
Description Canis familiaris cfa-miR-450a mature miRNA
Sequence 17 - UUUUUGCGAUGUGUUCCUAAUA - 38
Evidence experimental
cloned [1]

References

  1. PubMed ID: 15735639
    Systematic discovery of regulatory motifs in human promoters and 3' UTRs by comparison of several mammals
    "Xie X, Lu J, Kulbokas EJ, Golub TR, Mootha V, Lindblad-Toh K, Lander ES, Kellis M"
    "Nature (2005) 434:338-345