Stem-loop sequence hcmv-mir-UL112

Accession

MI0001680 (change log)

Previous IDs

hcv-miR-UL112-1;hcmv-mir-UL112-1

Description

Human cytomegalovirus miR-UL112 stem-loop

Stem-loop

           cc     a   g      c  c  cu 
5' gacagccu  ggauc cau guuacu ag gu  g
   ||||||||  ||||| ||| |||||| || ||   
3' cugucgga  ccuag gug caguga uc cg  c
           --     a   g      a  -  ac 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (EMBL:X17403.1): HEHCMVCG: 163187-163253 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0001680

Mature sequence hcmv-miR-UL112-5p

• Accession: MIMAT0026552
• Sequence: 6 - ccuccggaucacaugguuacuca - 28
• Evidence: experimental; Illumina [3]

Mature sequence hcmv-miR-UL112-3p

• Accession: MIMAT0001577
• Previous IDs: hcv-miR-UL112-1;hcmv-miR-UL112-1
• Sequence: 43 - aagugacggugagauccaggcu - 64
• Evidence: experimental; cloned [1-2], Illumina [3-4]

References

1. PMID:15782219 "Identification of microRNAs of the herpesvirus family" Pfeffer S, Sewer A, Lagos-Quintana M, Sheridan R, Sander C, Grasser FA, van Dyk LF, Ho CK, Shuman S, Chien M, Russo JJ, Ju J, Randall G, Lindenbach BD, Rice CM, Simon V, Ho DD, Zavolan M, Tuschl T Nat Methods. 2:269-276(2005).
2. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
3. PMID:22013051 "High-resolution profiling and analysis of viral and host small RNAs during human cytomegalovirus infection" Stark TJ, Arnold JD, Spector DH, Yeo GW J Virol. 86:226-235(2012).
4. PMID:22715351 "The microRNA Transcriptome of Human Cytomegalovirus (HCMV)" Meshesha MK, Veksler-Lublinsky I, Isakov O, Reichenstein I, Shomron N, Kedem K, Ziv-Ukelson M, Bentwich Z, Avni YS Open Virol J. 6:38-48(2012).