Stem-loop osa-MIR438

Accession

MI0001689

Description

Oryza sativa osa-MIR438 precursor miRNA

Literature search

1 open access papers mention osa-MIR438
(1 sentences)

Sequence

aacguguuuugggcaaacuuguuUUCCCACGCGUUAUAGUGAAAacuuuuggaauauguuuguuaugggaguauauauuauugauauuggaucuagaagcauaauuuuauauaacguguguuacggguggacaugguuucaaaaguuuucacuuuaacgcgugggauaucaucuacuuccuccguu
..........(((......((...((((((((((((.((((((((((((((((((((((((((.(((.(.(((((((..((((...((........))...))))..))))).)).).))).)))....))))).)))))))))))))))))).))))))))))))...))......)))......

Structure

aacguguuuu   caaacu  uuU            U                  -     ----   u   g a  -     uu    aua  gga 
          ggg      ug   UCCCACGCGUUA AGUGAAAacuuuuggaau auguu    ugu aug g gu auaua  auug   uu   u
          |||      ||   |||||||||||| |||||||||||||||||| |||||    ||| ||| | || |||||  ||||   ||    
          ccu      ac   agggugcgcaau ucacuuuugaaaacuuug uacag    gca ugu u ca uauau  uaau   aa   c
----uugccu   ucaucu  uau            u                  g     gugg   u   g g  a     uu    acg  gau 

Annotation confidence Not enough data

Genome context

Chr6: 20745965-20746150 [+]

Mature osa-miR438

• Accession: MIMAT0001587
• Description: Oryza sativa osa-miR438 mature miRNA
• Sequence: 24 - UUCCCACGCGUUAUAGUGAAA - 44
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15805478
   Cloning and characterization of microRNAs from rice
   "Sunkar R, Girke T, Jain PK, Zhu JK"
   "Plant Cell (2005) 17:1397-1411