miRBase entry: osa-MIR439f

Stem-loop osa-MIR439f


Accession
MI0001696
Description
Oryza sativa osa-MIR439f precursor miRNA
Gene family
MIPF0000092; MIR439

Literature search
2 open access papers mention osa-MIR439f
(2 sentences)

Sequence

95 reads, 65 reads per million, 2 experiments
accuacccugucgaacugacgcaguucgacauguaccugucgaacugugguuguucgauagguaucccUGUCGAACCGCGGUUGUUCGAcagggug
...(((((((((((((...(((.((((((((.(((((((((((((.......)))))))))))))...)))))))).)))...)))))))))))))

Structure
acc             uga   a        --u             ug 
   uacccugucgaac   cgc guucgaca   guaccugucgaac  u
   |||||||||||||   ||| ||||||||   |||||||||||||  g
   gugggacAGCUUG   GCG CAAGCUGU   uauggauagcuug  g
---             UUG   C        ccc             uu 


Annotation confidence Not enough data
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Genome context
Chr9: 16963024-16963119 [+]

Database links

Mature osa-miR439f

Accession MIMAT0001594
Description Oryza sativa osa-miR439f mature miRNA
Sequence 69 - UGUCGAACCGCGGUUGUUCGA - 89
Evidence experimental
cloned [1]
Database links

References

  1. PubMed ID: 15805478
    Cloning and characterization of microRNAs from rice
    "Sunkar R, Girke T, Jain PK, Zhu JK"
    "Plant Cell (2005) 17:1397-1411