Stem-loop osa-MIR439h

Accession

MI0001698

Description

Oryza sativa osa-MIR439h precursor miRNA

Gene family

MIPF0000092; MIR439

Literature search

2 open access papers mention osa-MIR439h
(2 sentences)

Sequence

94 reads, 65 reads per million, 2 experiments

accaccuacccugucgaacucacgcaguucgacauguaccugucgaacugugguuguucgauagguaucccUGUCGAACCGCGGUUGUUCGAcagggug
......(((((((((((((...(((.((((((((.(((((((((((((.......)))))))))))))...)))))))).)))...)))))))))))))

Structure

accacc             uca   a        --u             ug 
      uacccugucgaac   cgc guucgaca   guaccugucgaac  u
      |||||||||||||   ||| ||||||||   |||||||||||||  g
      gugggacAGCUUG   GCG CAAGCUGU   uauggauagcuug  g
------             UUG   C        ccc             uu 

Annotation confidence Not enough data

Genome context

Chr6: 1553119-1553217 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from osa-MIR439h

Mature osa-miR439h

• Accession: MIMAT0001596
• Description: Oryza sativa osa-miR439h mature miRNA
• Sequence: 72 - UGUCGAACCGCGGUUGUUCGA - 92
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15805478
   Cloning and characterization of microRNAs from rice
   "Sunkar R, Girke T, Jain PK, Zhu JK"
   "Plant Cell (2005) 17:1397-1411