miRBase entry: osa-MIR439i

Stem-loop osa-MIR439i


Accession
MI0001700
Description
Oryza sativa osa-MIR439i precursor miRNA
Gene family
MIPF0000092; MIR439

Literature search
2 open access papers mention osa-MIR439i
(2 sentences)

Sequence

137 reads, 77 reads per million, 2 experiments
gcagggacauauccaacgggcaguguucgauaggggcguggcuacagugacacuacaauguuuuuuucuauuuuuaaaauuauuuaaucacaUGUCGAACCGCGGUUGUUCGAuagguacccugu
((((((((.((((.(((((.(.((((((((((.(((.((.((....)).)).))..((((.((((..........)))).))))......).))))))).)))).))))).)))).)).))))))

Structure
      -  a    c     g a   -       g ggcguggcuacagugacacuac    u    uucu 
gcaggg ac uauc aacgg c gug uucgaua g                      aaug uuuu    a
|||||| || |||| ||||| | ||| ||||||| |                      |||| ||||     
uguccc ug auAG UUGUU G CGC AAGCUGU c                      uuau aaaa    u
      a  g    C     G -   C       a ----------------acuaau    u    uuuu 


Annotation confidence Not enough data
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Genome context
Unknown

Database links

Mature osa-miR439i

Accession MIMAT0001598
Description Oryza sativa osa-miR439i mature miRNA
Sequence 93 - UGUCGAACCGCGGUUGUUCGA - 113
Evidence experimental
cloned [1]

References

  1. PubMed ID: 15805478
    Cloning and characterization of microRNAs from rice
    "Sunkar R, Girke T, Jain PK, Zhu JK"
    "Plant Cell (2005) 17:1397-1411