Stem-loop sequence osa-MIR396e

Accession

MI0001703 (change log)

Description

Oryza sativa miR396e stem-loop

Gene family

MIPF0000047; MIR396

Literature search

55 open access papers mention osa-MIR396e
(140 sentences)

Stem-loop

       g    c      ca                g   uc      gu uaugugcucauguugggauuguggucgguggccuccaauucu 
5' gcgg caug uuucca  ggcuuucuugaacugu aac  gugggg  g                                          c
   |||| |||| ||||||  |||||||||||||||| |||  ||||||  |                                          u
3' cgcc guac aaaggu  ccgaaagaacuuggua uug  caucuc  c                                          g
       -    c      ac                g   uc      ug ugguuucugucuugccccucgagcuguuaagucgaaagaaaa 

Deep sequencing

2176 reads, 1.3e+03 reads per million, 2 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (MSU7): Chr4: 34436820-34437003 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0001703

Mature sequence osa-miR396e-5p

• Accession: MIMAT0001601
• Previous IDs: osa-MIR396e;osa-miR396e
• Sequence: 13 - uccacaggcuuucuugaacug - 33
• Deep sequencing: 2131 reads, 2 experiments
• Evidence: experimental; cloned [1], Illumina [2]
• Database links:
  • RNAcentral:URS0000440877_39947

Mature sequence osa-miR396e-3p

• Accession: MIMAT0015159
• Sequence: 152 - augguucaagaaagcccauggaaa - 175
• Deep sequencing: 45 reads, 2 experiments
• Evidence: experimental; Illumina [2]
• Database links:
  • RNAcentral:URS00000EECC2_39947

References

1. PMID:15805478 "Cloning and characterization of microRNAs from rice" Sunkar R, Girke T, Jain PK, Zhu JK Plant Cell. 17:1397-1411(2005).
2. PMID:19903869 "Rice MicroRNA effector complexes and targets" Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y Plant Cell. 21:3421-3435(2009).