miRBase entry: dre-mir-451

Stem-loop dre-mir-451


Accession
MI0001732
Description
Danio rerio dre-mir-451 precursor miRNA
Gene family
MIPF0000148; mir-451

Literature search
3 open access papers mention dre-mir-451
(13 sentences)

Sequence

7349 reads, 1319 reads per million, 11 experiments
agaggcggcgAAACCGUUACCAUUACUGAGUUuaguaaugguaaggguucugcugccuuu
.(((((((((.((((.((((((((((((....)))))))))))).)))).))))))))).

Structure
a         A    G            A 
 gaggcggcg AACC UUACCAUUACUG G
 ||||||||| |||| ||||||||||||  
 uuccgucgu uugg aaugguaaugau U
u         c    g            U 


Annotation confidence Not enough data
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Genome context
chr5: 42271971-42272030 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from dre-mir-451
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dre-miR-451

Accession MIMAT0001634
Description Danio rerio dre-miR-451 mature miRNA
Sequence 11 - AAACCGUUACCAUUACUGAGUU - 32
Evidence experimental
cloned [2]
Database links
Predicted targets

References

  1. PubMed ID: 15891114
    Clustering and conservation patterns of human microRNAs
    "Altuvia Y, Landgraf P, Lithwick G, Elefant N, Pfeffer S, Aravin A, Brownstein MJ, Tuschl T, Margalit H"
    "Nucleic Acids Res (2005) 33:2697-2706

  2. PubMed ID: 15937218
    The developmental miRNA profiles of zebrafish as determined by small RNA cloning
    "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
    "Genes Dev (2005) 19:1288-1293