miRBase entry: mmu-mir-452

Stem-loop mmu-mir-452


Accession
MI0001734
Symbol
MGI: Mir452
Description
Mus musculus mmu-mir-452 precursor miRNA
Gene family
MIPF0000287; mir-452

Literature search
8 open access papers mention mmu-mir-452
(14 sentences)

Sequence

3001 reads, 46 reads per million, 59 experiments
gcuaagcaguuacaacUGUUUGCAGAGGAAACUGAGACuuuauaacuaugucUCAGUCUCAUCUGCAAAGAGGUaagugcuuugc
((.(((((.((((..((.((((((((.((.((((((((...........)))))))).)).)))))))).)))))).))))).))

Structure
  u     g    aa  G        G  A        uuua 
gc aagca uuac  cU UUUGCAGA GA ACUGAGAC    u
|| ||||| ||||  || |||||||| || ||||||||    a
cg uucgu aaUG  GA AAACGUCU CU UGACUcug    a
  u     g    --  G        A  C        uauc 


Annotation confidence High
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Genome context
chrX: 72262224-72262308 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from mmu-mir-452
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mmu-miR-452-5p

Accession MIMAT0001637
Description Mus musculus mmu-miR-452-5p mature miRNA
Sequence 17 - UGUUUGCAGAGGAAACUGAGAC - 38
Evidence experimental
Illumina [2-3]
Database links
Predicted targets

Mature mmu-miR-452-3p

Accession MIMAT0017194
Description Mus musculus mmu-miR-452-3p mature miRNA
Sequence 53 - UCAGUCUCAUCUGCAAAGAGGU - 74
Evidence experimental
Illumina [3]
Database links
Predicted targets

References

  1. PubMed ID: 20215419
    MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
    "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
    "Mol Hum Reprod (2010) 16:463-471

  2. PubMed ID: 20413612
    Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
    "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
    "Genes Dev (2010) 24:992-1009

  3. PubMed ID: 15891114
    Clustering and conservation patterns of human microRNAs
    "Altuvia Y, Landgraf P, Lithwick G, Elefant N, Pfeffer S, Aravin A, Brownstein MJ, Tuschl T, Margalit H"
    "Nucleic Acids Res (2005) 33:2697-2706