miRBase entry: mtr-MIR393a

Stem-loop mtr-MIR393a


Accession
MI0001745
Description
Medicago truncatula mtr-MIR393a precursor miRNA
Gene family
MIPF0000083; MIR393

Literature search
4 open access papers mention mtr-MIR393a
(9 sentences)

Sequence

aacugcaacuugaggaggcaUCCAAAGGGAUCGCAUUGAUCcuauaauauuucaacuuuagucacuuuaauuuucucucauauaauacuuaauugggaucaugccaucccuuuggauuucuccuuuaguagcuac
....((.(((.(((((((.((((((((((((.((((.(((((((.................................................))))))))))).)))))))))))).))))))).))).))...

Structure
aacu  a   u       c            C    U       uaauauuucaacuuuagucacuu 
    gc acu gaggagg aUCCAAAGGGAU GCAU GAUCcua                       u
    || ||| ||||||| |||||||||||| |||| |||||||                       a
    cg uga uuccucu uagguuucccua cgua cuagggu                       a
-cau  a   u       u            c    -       uaauucauaauauacucucuuuu 


Annotation confidence Not enough data
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Genome context
chr3: 21952259-21952393 [+]

Database links

Mature mtr-miR393a

Accession MIMAT0001647
Description Medicago truncatula mtr-miR393a mature miRNA
Sequence 21 - UCCAAAGGGAUCGCAUUGAUC - 41
Evidence experimental
Northern [2]

References

  1. Conservation and divergence of microRNA families in plants
    "Dezulian T, Palatnik JF, Huson DH, Weigel D"
    Genome Biol. (2005) 6:P13

  2. PubMed ID: 19555436
    Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families
    "Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL, Wiley GB, Roe BA, Zhang W, Sunkar R"
    "New Phytol (2009) 184:85-98