Stem-loop gma-MIR319a

Accession

MI0001782

Description

Glycine max gma-MIR319a precursor miRNA

Gene family

MIPF0000010; MIR159

Literature search

21 open access papers mention gma-MIR319a
(59 sentences)

Sequence

cguugaagacccuaagguaagagagcuuucuucaguccacucaugggugacaguaagauucaauuagcugccgacucauucauccaaauguugaguguaagcgaauaaauauacucagcagaugagugaaugaugcgggagacaaauugaaucuuaaguuuccuguacUUGGACUGAAGGGAGCUCCCuuuuccuuuugucucuuac
......((((...((((.(((.(((((((((((((((((...(((((.(((..((((((((((((.(((.(((..((((((((.((..(((((((((((..........)))))))))))..)).))))))))..))).)).).)))))))))))).))).)))))...))))))))))))))))).)))..))))..)))).....

Structure

cguuga    ccu    -u   a                 cuc     u   ag            a -  g   ac        c  aa           agcg 
      agac   aagg  aag gagcuuucuucagucca   auggg gac  uaagauucaauu g cu ccg  ucauucau ca  uguugagugua    a
      ||||   ||||  ||| |||||||||||||||||   ||||| |||  |||||||||||| | || |||  |||||||| ||  |||||||||||     
      ucug   uucc  uuC CUCGAGGGAAGUCAGGU   ugucc uug  auucuaaguuaa c ga ggc  aguaagug gu  acgacucauau    a
-cauuc    -uu    uu   C                 Uca     u   -a            a a  g   gu        a  ag           aaau 

Annotation confidence Not enough data

Genome context

chr5: 39506583-39506789 [-]

Mature gma-miR319a

• Accession: MIMAT0001684
• Description: Glycine max gma-miR319a mature miRNA
• Sequence: 169 - UUGGACUGAAGGGAGCUCCC - 188
• Evidence: experimental ; 454 [1,3]

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13


2. PubMed ID: 18402695
   Novel and nodulation-regulated microRNAs in soybean roots
   Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O
   BMC Genomics (2008) 9:160


3. PubMed ID: 21504877
   MicroRNAs in the shoot apical meristem of soybean
   "Wong CE, Zhao YT, Wang XJ, Croft L, Wang ZH, Haerizadeh F, Mattick JS, Singh MB, Carroll BJ, Bhalla PL"
   "J Exp Bot (2011) 62:2495-2506