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miRBase |
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Stem-loop sequence zma-MIR171d |
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Accession | MI0001792 (change log) | ||||
Description | Zea mays miR171d stem-loop | ||||
Gene family | MIPF0000030; MIR171_1 | ||||
Literature search |
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19 open access papers mention zma-MIR171d | ||||
Stem-loop |
agaa u a au u c uugaa ----aau a 5' auggaag gua cu gguguuggc cggcuca ucagaag gccg cc a ||||||| ||| || ||||||||| ||||||| ||||||| |||| || 3' uacuuuc cau ga cuauaaccg gccgagu agucuuu cggc gg a gucg u - cu u u ----g cgucgau u |
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Deep sequencing |
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Confidence |
Annotation confidence: high
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Genome context |
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Database links |
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Mature sequence zma-miR171d-5p |
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Accession | MIMAT0015160 |
Previous IDs | zma-miR171d* |
Sequence |
23 - uguuggcucggcucacucaga - 43 |
Deep sequencing | 516 reads, 149 experiments |
Evidence | experimental; Illumina [2] |
Mature sequence zma-miR171d-3p |
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Accession | MIMAT0001694 |
Previous IDs | zma-miR171d |
Sequence |
82 - ugauugagccgugccaauauc - 102 |
Deep sequencing | 2873 reads, 172 experiments |
Evidence | experimental; Illumina [2] |
Database links |
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References |
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1 |
"Conservation and divergence of microRNA families in plants"
http://genomebiology.com/2005/6/11/p13 (2005).
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2 |
PMID:19936050
"A genome-wide characterization of microRNA genes in maize"
PLoS Genet. 5:e1000716(2009).
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