miRBase entry: zma-MIR399e

Stem-loop zma-MIR399e


Accession
MI0001806
Description
Zea mays zma-MIR399e precursor miRNA
Gene family
MIPF0000015; MIR399

Literature search
25 open access papers mention zma-MIR399e
(73 sentences)

Sequence

332 reads, 633 reads per million, 2 experiments
augccuaagcuguccaguuucaGGGCUUCUCUUUCUUGGCAGGgaagcaugagaugccauagcucucugcucucuucaacccucUGCCAAAGGAGAGUUGCCCUGuaacaggacucagcuuaug
.....((((((((((.(((.((((((..((((((.(((((((((.((((.((((.((....))))))))))..........))))))))).))))))..)))))).))).))))..))))))..

Structure
augcc      --    a   u      UU      C         ---------a    u    u  c 
     uaagcu  gucc guu caGGGC  CUCUUU UUGGCAGGg          agca gaga gc a
     ||||||  |||| ||| ||||||  |||||| |||||||||          |||| |||| ||  
     auucga  cagg caa GUCCCG  GAGAGG AACCGUcuc          ucgu cucu cg u
---gu      cu    a   u      UU      A         ccaacuucuc    -    -  a 


Annotation confidence Not enough data
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Genome context
chr2: 16763309-16763432 [-]

Database links

Mature zma-miR399e-5p

Accession MIMAT0015173
Description Zea mays zma-miR399e-5p mature miRNA
Sequence 23 - GGGCUUCUCUUUCUUGGCAGG - 43
Evidence experimental
Illumina [2]
Database links

Mature zma-miR399e-3p

Accession MIMAT0001708
Description Zea mays zma-miR399e-3p mature miRNA
Sequence 85 - UGCCAAAGGAGAGUUGCCCUG - 105
Evidence experimental
Illumina [2]
Database links

References

  1. PubMed ID: 19936050
    A genome-wide characterization of microRNA genes in maize
    Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
    PLoS Genet (2009) 5:e1000716

  2. Conservation and divergence of microRNA families in plants
    "Dezulian T, Palatnik JF, Huson DH, Weigel D"
    Genome Biol. (2005) 6:P13