Stem-loop sequence zma-MIR399e

Accession

MI0001806 (change log)

Description

Zea mays miR399e stem-loop

Gene family

MIPF0000015; MIR399

Literature search

25 open access papers mention zma-MIR399e
(72 sentences)

Stem-loop

   augcc      --    a   u      uu     uc         ---------a    u    u  c 
5'      uaagcu  gucc guu cagggc  cucuu  uuggcaggg          agca gaga gc a
        ||||||  |||| ||| ||||||  |||||  |||||||||          |||| |||| ||  
3'      auucga  cagg caa gucccg  gagag  aaccgucuc          ucgu cucu cg u
   ---gu      cu    a   u      uu     ga         ccaacuucuc    -    -  a 

Deep sequencing

1092 reads, 486 reads per million, 125 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (B73_RefGen_v4; GCA_000005005.6): chr2: 16763309-16763432 [-]
• Overlapping transcripts:

  intergenic

Database links

• RNAcentral:URS000075F00C_4577
• miRBase Tracker:MI0001806

Mature sequence zma-miR399e-5p

• Accession: MIMAT0015173
• Previous IDs: zma-miR399e*
• Sequence: 23 - gggcuucucuuucuuggcagg - 43
• Deep sequencing: 270 reads, 113 experiments
• Evidence: experimental; Illumina [2]
• Database links:
  • RNAcentral:URS000075BFBC_4577

Mature sequence zma-miR399e-3p

• Accession: MIMAT0001708
• Previous IDs: zma-miR399e
• Sequence: 85 - ugccaaaggagaguugcccug - 105
• Deep sequencing: 689 reads, 6 experiments
• Evidence: experimental; Illumina [2]
• Database links:
  • RNAcentral:URS00003CFBD5_4577

References

1. "Conservation and divergence of microRNA families in plants" Dezulian T, Palatnik JF, Huson DH, Weigel D http://genomebiology.com/2005/6/11/p13 (2005).
2. PMID:19936050 "A genome-wide characterization of microRNA genes in maize" Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D PLoS Genet. 5:e1000716(2009).