miRBase entry: zma-MIR156j

Stem-loop zma-MIR156j


Accession
MI0001808
Description
Zea mays zma-MIR156j precursor miRNA
Gene family
MIPF0000008; MIR156

Literature search
52 open access papers mention zma-MIR156j
(343 sentences)

Sequence

892 reads, 1457 reads per million, 10 experiments
cgaguggaccucgggagcgaUGACAGAAGAGAGAGAGCACAacccagcaccagcgaggaaaagccucgcuucugcgagggccgugUGCUCUCUGCUCUCACUGUCAUCgcccacaggccaccgaa
((.((((.(((..((.((((((((((.((((((((((((((.(((.(((..(((((((.....)))))))..)))..)))...)))))))))).))))..))))))))))))..)))))))))..

Structure
--  a    a   cg  a          -A    -          --a   -a   cc       a 
  cg gugg ccu  gg gcgaUGACAG  AGAG AGAGAGCACA   ccc  gca  agcgagg a
  || |||| |||  || ||||||||||  |||| ||||||||||   |||  |||  ||||||| a
  gc cacc gga  cc cgCUACUGUC  UCUC UCUCUCGUgu   ggg  cgu  ucgcucc a
aa  -    -   ca  -          AC    G          gcc   ag   cu       g 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr7: 134663764-134663888 [-]

Database links

Mature zma-miR156j-5p

Accession MIMAT0001710
Description Zea mays zma-miR156j-5p mature miRNA
Sequence 21 - UGACAGAAGAGAGAGAGCACA - 41
Evidence experimental
Illumina [2]
Database links

Mature zma-miR156j-3p

Accession MIMAT0015175
Description Zea mays zma-miR156j-3p mature miRNA
Sequence 86 - UGCUCUCUGCUCUCACUGUCAUC - 108
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 19936050
    A genome-wide characterization of microRNA genes in maize
    Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
    PLoS Genet (2009) 5:e1000716

  2. Conservation and divergence of microRNA families in plants
    "Dezulian T, Palatnik JF, Huson DH, Weigel D"
    Genome Biol. (2005) 6:P13