miRBase entry: zma-MIR159a

Stem-loop zma-MIR159a


Accession
MI0001809
Description
Zea mays zma-MIR159a precursor miRNA
Gene family
MIPF0000010; MIR159

Literature search
32 open access papers mention zma-MIR159a
(253 sentences)

Sequence

6049 reads, 17754 reads per million, 131 experiments
ucgaugcuuuggguuugaagcgGAGCUCCUAUCAUUCCAAUGAagggucguuccgaagggcugguuccgcugcucguucaugguucccacuauccuaucucaucauguguauauauguaauccaugggggaggguuucucucgucuuugagauaggcuugugguuugcaugaccgaggagcugcaccgcccccuugcuggccgcucUUUGGAUUGAAGGGAGCUCUGcauccugauccaccccucc
.........((((((.((.(((((((((((.(((.(((((.((..(((((...(((.(((.((((.(.(((.((((.(((((....((((...(((((((((.(((((....)))))........(((.(((((...))))).))).)))))))))...))))....))))).)))).))).).)))).))).))).)))))..)).))))).))).))))))))))).))..)))))).......

Structure
ucgaugcuu      -u  a           A   U     U  ag     uuc   a   c    u c   g    u     guuc    uau         ucauguguauauauguaauccau   g     u 
         uggguu  ga gcgGAGCUCCU UCA UCCAA GA  ggucg   cga ggg uggu c gcu cucg ucaug    ccac   ccuaucuca                       ggg gaggg  
         ||||||  || ||||||||||| ||| ||||| ||  |||||   ||| ||| |||| | ||| |||| |||||    ||||   |||||||||                       ||| ||||| u
         accuag  cu cGUCUCGAGGG AGU AGGUU cu  ccggu   guu ccc gcca g cga gagc aguac    ggug   ggauagagu                       ucu cucuc  
--ccucccc      uc  a           A   U     U  cg     --c   c   c    c u   g    c     guuu    uuc         ----------------------u   g     u 


Annotation confidence High
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Genome context
chr8: 10753073-10753318 [+]

Database links

Mature zma-miR159a-5p

Accession MIMAT0015176
Description Zea mays zma-miR159a-5p mature miRNA
Sequence 23 - GAGCUCCUAUCAUUCCAAUGA - 43
Evidence experimental
Illumina [2]

Mature zma-miR159a-3p

Accession MIMAT0001711
Description Zea mays zma-miR159a-3p mature miRNA
Sequence 207 - UUUGGAUUGAAGGGAGCUCUG - 227
Evidence experimental
Illumina [2]
Database links

References

  1. PubMed ID: 19936050
    A genome-wide characterization of microRNA genes in maize
    Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
    PLoS Genet (2009) 5:e1000716

  2. Conservation and divergence of microRNA families in plants
    "Dezulian T, Palatnik JF, Huson DH, Weigel D"
    Genome Biol. (2005) 6:P13