Stem-loop zma-MIR167e

Accession

MI0001819

Description

Zea mays zma-MIR167e precursor miRNA

Gene family

MIPF0000023; MIR167_1

Literature search

31 open access papers mention zma-MIR167e
(131 sentences)

Sequence

22935 reads, 51583 reads per million, 13 experiments

uugguguguccucuaguagcUGAAGCUGCCAGCAUGAUCUGagguguccacagcauauauauggaagcagcuagcgaucaGAUCAUGCUGUGCAGUUUCAUCugcucguggacgcacac
...((((((((.(.(((((.(((((((((((((((((((((((.((((((...........)))..))).)......))))))))))))).))))))))).))))).).))))))))..

Structure

uug        u u     c         -             ------ g   --   cagc 
   gugugucc c aguag UGAAGCUGC CAGCAUGAUCUGa      g ugu  cca    a
   |||||||| | ||||| ||||||||| |||||||||||||      | |||  |||    u
   cacgcagg g ucguC ACUUUGACG GUCGUACUAGacu      c acg  ggu    a
-ca        u c     U         U             agcgau g   aa   auau 

Annotation confidence High

Genome context

chr7: 10115799-10115917 [-]

Mature zma-miR167e-5p

• Accession: MIMAT0001721
• Description: Zea mays zma-miR167e-5p mature miRNA
• Sequence: 21 - UGAAGCUGCCAGCAUGAUCUG - 41
• Evidence: experimental ; Illumina [2]

Mature zma-miR167e-3p

• Accession: MIMAT0015186
• Description: Zea mays zma-miR167e-3p mature miRNA
• Sequence: 81 - GAUCAUGCUGUGCAGUUUCAUC - 102
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716


2. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13